First remove the brake caliper from the holder. That way you can install it after the axle is in place and you don't have to fool around lining up the pads with the rotor. Next start the axle in from the brake side through the swing arm, chain adjustment block, and caliper holder. Place the spacers on the wheel if there are any and move the wheel into position and get the axle started in spacer. That will hold one side in place while you rock the wheel back and forth to align the rest.
Every bike I ever owned, was the best bike I ever owned when I owned it. Well, except for that one Harley